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Media Encoder ignores Premiere Pro sequence In and Out

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I'm having trouble exporting sequences to Media Encoder. From Premiere Pro CC 2015.0.1, I export timelines with marked Ins and Outs to Media Encoder CC 2015.0.1. I examine the export settings in Media Encoder and the drop down menu shows that it's going to use the Sequence In and Out. If I render using Apple ProRez, it works fine.  But if I pick almost anything else as a preset, the render seems to always start the render 17 seconds later than the sequence In point.  (If I choose to render just using Premiere Pro without exporting to Media Encoder, everything seems to work fine.)  Is there a setting I'm missing in either Premiere Pro or Media Encoder?

 

I'm using:

 

iMac (Retina 5K, 27-inch, Late 2014)

4 GHz Intel Core i7

32 GB 1600 MHz DDR3

AMD Radeon R9 M295X 4096 MB

 

Yosemite 10.10.4

 

Thanks!

 

Frank


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